Sometimes when I exit Pico-8 to the raspberry pi 3 desktop, I find that I had been clicking on things underneath and opening folders, other programs, etc.

As a workaround for this, I just have absolutely nothing on my desktop except the toolbar at the very bottom, but I felt I ought to report this in any event.

This bug appears to still be present. I have almost nothing operating on my raspberry pi linux desktop, but even so sometimes I leave pico 8 and I find some windows or menus open. I suppose I could work around this by writing a script to temporarily disable or shut down the desktop system, but clicks falling through any application still seems like a bug to me.

I checked the docs and I wonder if this setting may work around this problem? I'll give it a try.

fullscreen_method n
0 = "safe", 1 = borderless desktop-sized window, 2 = OS full screen

I can confirm with all three settings, mouse clicks still fall through Pico-8 to the desktop.